To study human evolution, researchers sometimes use microstructures found in human teeth and their knowledge of the processes by which those structures grow. Human fetusus begin to develop teeth in utero. As teeth grow, they form a hard outer substance, called enamel, through a process called amelogenesis. During amelogenesis, incremental layers of enamel form in a Circadian rhythm. This rhythmic deposition leaves the enamel with microstructures, called cross-striations and striae of Retzius, which have a regular periodicity. Because enamel is not renewed throughout life like other tissues, teeth preserve the timing and details of a person's growth and development. Thus, enamel microstructures, from living people and from fossilized teeth, can be used to reconstruct the growth, development, and life histories of current and past humans. Researchers can also compare current and fossilized microstructures to trace changes in those traits over the course of human evolution.

Johann Friedrich Meckel and Antoine Etienne Reynaud Augustin Serres developed in the early 1800s the basic principles of what later became called the Meckel-Serres Law. Meckel and Serres both argued that fetal deformities result when development prematurely stops, and they argued that these arrests characterized lower life forms, through which higher order organisms progress during normal development. The concept that the embryos of higher order organisms progress through successive stages in which they resemble lower level forms is called recapitulation. Meckel, a professor of anatomy at the University of Halle in Halle, Germany, and Serres, a physician at Hotel-Dieu de Paris in Paris, France, did not work together. Rather, in the late nineteenth and early twentieth centuries, their similar approaches, in which they compared the anatomy and embryos of different species so as to relate stages of embryonic development to the scala naturae, led oher scientists to generalize their individual concepts into one general theory. The recapitulation ideas of Meckel and Serres became part of the mid-eighteenth century debate about how to explain morphological similarities between species.

Among other functions, the Notch signaling pathway forestalls the process of myogenesis in animals. The Notch signaling pathway is a pathway in animals by which two adjacent cells within an organism use a protein named Notch to mechanically interact with each other. Myogenesis is the formation of muscle that occurs throughout an animal's development, from embryo to the end of life. The cellular precursors of skeletal muscle originate in somites that form along the dorsal side of the organism. The Notch signaling pathway is active in multiple aspects of somitogenesis, and it continues to be a critical regulator during myogenesis. Throughout the life of an organism, Notch signaling prevents the differentiation of muscle progenitor cells into muscle cells. Such preventions help maintain populations of progenitor cells that can remain dormant until the growth or repair of muscle is necessary, at which point the Notch signal to the muscle progenitor cells is disrupted, and the muscle progenitor cells differentiate into muscle fibers and cells. Without Notch signaling, myogenesis proceeds prematurely and dissipates before mature muscle can form.

Among other functions, the Notch signaling pathway contributes to the development of somites in animals. It involves a cell signaling mechanism with a wide range of functions, including cellular differentiation, and the formation of the embryonic structures (embryogenesis). All multicellular animals use Notch signaling, which is involved in the development, maintenance, and regeneration of a range of tissues. The Notch signaling pathways spans two cells, and consists of receptor proteins, which cross one cell's membrane and interacts with proteins on adjacent cells, called ligands. The physical interaction of receptors and ligands directs the genetic response of the first cell to produce proteins that define the type of cell it will become. One of the earliest discovered roles of the Notch signaling pathway in vertebrates is in somite formation (somitogenesis). Somitogenesis is the formation of somites, which are sphere-like structures in early vertebrate embryos that are the first visible signs of segmentation. Somites then help to define many tissues and features of the adult animal's body. The Notch signaling pathway plays at least two distinct roles during somitogenesis: the first is maintenance of an oscillating protein gradient, called the segmental clock, and the second is establishing the polarity of somites. Mutations to genes in the Notch pathway can result in birth defects characterized by abnormal development of bones of the spine and ribs, like spondylocostal dysostosis. Additionally, dysfunction in the pathway linked to cancer progression, HIV-related complications, and Alzheimer´s disease, among other disorders.

On the Origin of Mitosing Cells by Lynn Sagan appeared in the March 1967 edition of the Journal of Theoretical Biology. At the time the article was published, Lynn Sagan had divorced astronomer Carl Sagan, but kept his last name. Later, she remarried and changed her name to Lynn Margulis, and will be referred to as such throughout this article. In her 1967 article, Margulis develops a theory for the origin of complex cells that have enclosed nuclei, called eukaryotic cells. She proposes that three organelles: mitochondria, plastids, and basal bodies, which are all parts of eukaryotic cells, were once free-living cells that took residence inside primitive eukaryotic cells. This process Margulis called endosymbiosis. Margulis' theory explained the origin of eukaryote cells, which are the fundamental cell type of most multicellular organisms and form the basis of embryogenesis. After fertilization, embryos develop from a single eukaryotic cell that divides by mitosis.

The biogenetic law is a theory of development and evolution proposed by Ernst Haeckel in Germany in the 1860s. It is one of several recapitulation theories, which posit that the stages of development for an animal embryo are the same as other animals' adult stages or forms. Commonly stated as ontogeny recapitulates phylogeny, the biogenetic law theorizes that the stages an animal embryo undergoes during development are a chronological replay of that species' past evolutionary forms. The biogenetic law states that each embryo's developmental stage represents an adult form of an evolutionary ancestor. According to the law, by studying the stages of embryological development, one is, in effect, studying the history and diversification of life on Earth. The biogenetic law implied that researchers could study evolutionary relationships between taxa by comparing the developmental stages of embryos for organisms from those taxa. Furthermore, the evidence from embryology supported the theory that all of species on Earth share a common ancestor.

Hermaphrodites and the Medical Invention of Sex, by historian of science Alice Domurat Dreger, was published in 1998 by Harvard University Press. In the book, Dreger describes how many doctors and scientists treated human hermaphrodites from the late nineteenth century to the early twentieth century. She states that during this time period, many physicians and scientists struggled to determine the nature sex, and to support a classification of sex as male or female, many physicians and scientists resorted to viewing a person's gonads for identification of his or her sex. At the time that this book was published, Dreger was a faculty associate at the Center for Ethics and Humanities in the Life Sciences at the College of Medicine, University of Michigan, Michigan.

Neurocristopathies are a class of pathologies in vertebrates, including humans, that result from abnormal expression, migration, differentiation, or death of neural crest cells (NCCs) during embryonic development. NCCs are cells derived from the embryonic cellular structure called the neural crest. Abnormal NCCs can cause a neurocristopathy by chemically affecting the development of the non-NCC tissues around them. They can also affect the development of NCC tissues, causing defective migration or proliferation of the NCCs. There are many neurocristopathies that affect many different types of systems. Some neurocristopathies result in albinism (piebaldism) and cleft palate in humans. Various pigment, skin, thyroid, and hearing disorders, craniofacial and heart abnormalities, malfunctions of the digestive tract, and tumors can be classified as neurocristopathies. This classification ties a variety of disorders to one embryonic origin.

Early in the process of development, vertebrate embryos develop a fold on the neural plate where the neural and epidermal ectoderms meet, called the neural crest. The neural crest produces neural crest cells (NCCs), which become multiple different cell types and contribute to tissues and organs as an embryo develops. A few of the organs and tissues include peripheral and enteric (gastrointestinal) neurons and glia, pigment cells, cartilage and bone of the cranium and face, and smooth muscle. The diversity of NCCs that the neural crest produces has led researchers to propose the neural crest as a fourth germ layer, or one of the primary cellular structures in early embryos from which all adult tissues and organs arise. Furthermore, evolutionary biologists study the neural crest because it is a novel shared evolutionary character (synapomorphy) of all vertebrates.

In 1828, while working at the University of Konigsberg in Konigsberg, Germany Karl Ernst von Baer proposed four laws of animal development, which came to be called von Baer's laws of embryology. With these laws, von Baer described the development (ontogeny) of animal embryos while also critiquing popular theories of animal development at the time. Von Baer's laws of embryology provided a framework to research the relationships and patterns between the development of different classes of organisms, and the patterns between this development and the diversification of species on Earth (phylogeny).