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John von Neumann's Cellular Automata
Cellular automata (CA) are mathematical models used to simulate complex systems or processes. In several fields, including biology, physics, and chemistry, CA are employed to analyze phenomena such as the growth of plants, DNA evolution, and embryogenesis. In the 1940s John von Neumann formalized the idea of cellular automata in order to create a theoretical model for a self-reproducing machine. Von Neumann's work was motivated by his attempt to understand biological evolution and self-reproduction.
Thesis: A History of Cellular Senescence and Its Relation to Stem Cells in the Twentieth and Twenty-First Centuries
This study aims to provide information to answer the following question: While some scientists claim they can indefinitely culture a stem cell line in vitro, what are the consequences of those culturing practices? An analysis of a cluster of articles from the Embryo Project Encyclopedia provides information to suggest possible solutions to some potential problems in cell culturing, recognition of benefits for existing or historical culturing practices, and identification of gaps in scientific knowledge that warrant further research.
Format: Essays and Theses
Subject: Processes, Publications
Dizhou Tong (1902-1979)
Dizhou Tong, also called Ti Chou Tung, studied marine animals and helped introduce and organize experimental embryology in China during the twentieth century. He introduced cellular nuclear transfer technology to the Chinese biological community, developed methods to clone organisms from many marine species, and investigated the role of cytoplasm in early development. Tong's administrative and scientific leadership in the fields of marine, cellular, and developmental biology contributed to China's experimental embryology research programs.
John von Neumann (1903-1957)
John von Neumann was a Hungarian mathematician who made important contributions to mathematics, physics, computer science, and the area of artificial life. He was born in Budapest, Hungary, on 28 December 1903. His mother was Margit von Neumann and his father was Max von Neumann. His work on artificial life focused on the problem of the self-reproduction of machines. Von Neumann initially discussed self-reproducing machines in his Hixon Symposium paper "The General and Logical Theory of Automata" published in 1948.
Dissertation: Degeneration in Miniature: History of Cell Death and Aging Research in the Twentieth Century
Once perceived as an unimportant occurrence in living organisms, cell degeneration was reconfigured as an important biological phenomenon in development, aging, health, and diseases in the twentieth century. This dissertation tells a twentieth-century history of scientific investigations on cell degeneration, including cell death and aging.
Format: Essays and Theses
Telomeres and Telomerase in Cellular Aging (Senescence)
Telomeres are sequences of DNA on the ends of chromosomes that protect chromosomes from sticking to each other or tangling, which could cause irregularities in normal DNA functions. As cells replicate, telomeres shorten at the end of chromosomes, which correlates to senescence or cellular aging. Integral to this process is telomerase, which is an enzyme that repairs telomeres and is present in various cells in the human body, especially during human growth and development.
"The Limited In Vitro Lifetime of Human Diploid Cell Strains" (1964), by Leonard Hayflick
Leonard Hayflick in the US during the early 1960s showed that normal populations of embryonic cells divide a finite number of times. He published his results as 'The Limited In Vitro Lifetime of Human Diploid Cell Strains' in 1964. Hayflick performed the experiment with WI-38 fetal lung cells, named after the Wistar Institute, in Philadelphia, Pennsylvania, where Hayflick worked. Frank MacFarlane Burnet, later called the limit in capacity for cellular division the Hayflick Limit in 1974.
The Game of Life, by John Horton Conway
The Game of Life, or just Life, is a one-person game that was created by the English mathematician John Horton Conway in the late 1960s. It is a simple representation of birth, death, development, and evolution in a population of living organisms, such as bacteria. Martin Gardner popularized the Game of Life by writing two articles for his column "Mathematical Games" in the journal Scientific American in 1970 and 1971. There exist several websites that provide the Game of Life as a download or as an online game.
Mechanism of Notch Signaling
Mechanism of Notch Signaling: The image depicts a type of cell signaling, in which two animal cells interact and transmit a molecular signal from one to the other. The process results in the production of proteins, which influence the cells as they differentiate, move, and contribute to embryological development. In the membrane of the signaling cell, there is a ligand (represented by a green oval). The ligand functions to activate a change in a receptor molecule. In the receiving cell, there are receptors; in this case, Notch proteins (represented by orange forks).
"Genetic Programming: Artificial Nervous Systems, Artificial Embryos and Embryological Electronics" (1991), by Hugo de Garis
In 1991, Hugo de Garis' article "Genetic Programming: Artificial Nervous Systems, Artificial Embryos and Embryological Electronics" was published in the book Parallel Problem Solving from Nature. With this article de Garis hoped to create what he envisioned as a new branch of artificial embryology called embryonics (short term for "embryological electronics"). Embryonics is based on the idea of adapting the processes found in embryonic development to build artificial systems.
"Cellular death in morphogenesis of the avian wing" (1962), by John W. Saunders Jr., et al.
In the early 1960s, John W. Saunders Jr., Mary T. Gasseling, and Lilyan C. Saunders in the US investigated how cells die in the developing limbs of chick embryos. They studied when and where in developing limbs many cells die, and they studied the functions of cell death in wing development. At a time when only a few developmental biologists studied cell death, or apoptosis, Saunders and his colleagues showed that researchers could use embryological experiments to uncover the causal mechanisms of apotosis.
Rudolf Carl Virchow (1821-1902)
Rudolf Carl Virchow lived in nineteenth century Prussia, now Germany, and proposed that omnis cellula e cellula, which translates to each cell comes from another cell, and which became and fundamental concept for cell theory. He helped found two fields, cellular pathology and comparative pathology, and he contributed to many others. Ultimately Virchow argued that disease is caused by changes in normal cells, also known as cellular pathology.
The epigenetic landscape is a concept representing embryonic development. It was proposed by Conrad Hal Waddington to illustrate the various developmental pathways a cell might take toward differentiation. The epigenetic landscape integrates the connected concepts of competence, induction, and regulative abilities of the genes into a single model designed to explain cellular differentiation, a long standing problem in embryology.
Dictyostelium discoideum is a cellular slime mold that serves as an important model organism in a variety of fields. Cellular slime molds have an unusual life cycle. They exist as separate amoebae, but after consuming all the bacteria in their area they proceed to stream together to form a multicellular organism. These features make it a valuable tool for studying developmental processes and also for investigating the evolution of multicellularity. Long thought to be a type of fungus, it has recently been shown that slime molds in fact bear no relation to fungi.
HeLa Cell Line
The HeLa cell line was the first immortal human cell line that George Otto Gey, Margaret Gey, and Mary Kucibek first isolated from Henrietta Lacks and developed at The Johns Hopkins Hospital in Baltimore, Maryland, in 1951. An immortal human cell line is a cluster of cells that continuously multiply on their own outside of the human from which they originated. Scientists use immortal human cell lines in their research to investigate how cells function in humans.
Subject: Technologies, Experiments, People, Ethics
The First Successful Cloning of a Gaur (2000), by Advanced Cell Technology
The first successful cloning of a gaur in 2000 by Advanced Cell Technology involved the cells of two animals: an egg cell from a domestic cow and a skin cell from a gaur. The researchers extracted the egg cell from the ovary of the domestic cow and the skin cell from the skin of the gaur. First, the researchers performed nuclear transplantation on the egg cell of the cow, during which they removed the nucleus of the egg cell. The mitochondria of the egg cell remained intact inside the cell.
Subject: Experiments, Organisms, Reproduction
Lysogenic Bacteria as an Experimental Model at the Pasteur Institute (1915-1965)
Lysogenic bacteria, or virus-infected bacteria, were the primary experimental models used by scientists working in the laboratories of the Pasteur Institute in Paris, France, during the 1950s and 1960s. Historians of science have noted that the use of lysogenic bacteria as a model in microbiological research influenced the scientific achievements of the Pasteur Institute's scientists.
Subject: Organisms, Experiments
"The Cell-Theory" (1853), by Thomas Henry Huxley
The Cell-Theory was written by Thomas Henry Huxley in Britain and published in 1853 by The British and Foreign Medico-Chirurgical Review. The twenty-two page article reviews twelve works on cell theory, including those in Germany by Caspar Friedrich Wolff in the eighteenth century and by Karl Ernst von Baer in the nineteenth century. Huxley spends much of The Cell-Theory on a cell theory proposed in the late 1830s by Matthias Schleiden and Theodor Schwann in Germany.
The Role of the Notch Signaling Pathway in Myogenesis
Among other functions, the Notch signaling pathway forestalls the process of myogenesis in animals. The Notch signaling pathway is a pathway in animals by which two adjacent cells within an organism use a protein named Notch to mechanically interact with each other. Myogenesis is the formation of muscle that occurs throughout an animal's development, from embryo to the end of life. The cellular precursors of skeletal muscle originate in somites that form along the dorsal side of the organism.
Hedgehog Signaling Pathway
The hedgehog signaling pathway is a mechanism that directs the development of embryonic cells in animals, from invertebrates to vertebrates. The hedgehog signaling pathway is a system of genes and gene products, mostly proteins, that convert one kind of signal into another, called transduction. In 1980, Christiane Nusslein-Volhard and Eric F. Wieschaus, at the European Molecular Biology Laboratory in Heidelberg, Germany, identified several fruit fly (Drosophila melanogaster) genes.
Theodor Heinrich Boveri (1862-1915)
Theodor Boveri investigated the mechanisms of heredity. He developed the chromosomal theory of inheritance and the idea of chromosomal individuality. Boveri sought to provide a comprehensive explanation for the hereditary role and behavior of chromosomes. He hoped that his experiments would also help to distinguish the roles of the nucleus and the cytoplasm in embryogenesis. Boveri was particularly interested in how offspring are shaped by the attributes of their parents.
Mitochondria are organelles found in the cytoplasm of eukaryotic cells. They are composed of an outer membrane and an inner membrane. The outer membrane faces the cellular cytoplasm, while the inner membrane folds back on itself multiple times, forming inner folds, called cristae. The space between the two membrane layers is called the intermembrane space, and the space within the inner membrane is called the matrix.
Forbes v. Napolitano (2000)
Forbes v. Napolitano (2000) was a US court case that established that Arizona researchers could use fetal tissues from induced abortions for basic scientific research, for instance, as a source of stem cells. The case challenged the constitutionality of the Arizona Revised Statute (ARS) 36-2303 in the Ninth Circuit US Court of Appeals, a law that banned researchers from using fetal tissues from abortions for any type of medical experimentation or investigation. The Ninth Circuit US Court of Appeals decision in Forbes v.
The Hayflick Limit
The Hayflick Limit is a concept that helps to explain the
mechanisms behind cellular aging. The concept states that a normal human
cell can only replicate and divide forty to sixty times before it
cannot divide anymore, and will break down by programmed cell death
or apoptosis. The concept of the Hayflick Limit revised Alexis
Carrel's earlier theory, which stated that cells can replicate
themselves infinitely. Leonard Hayflick developed the concept while
at the Wistar Institute in Philadelphia,
The Effects of Gene Regulation on Aging in Caenorhabditis elegans (2003)
In 2003, molecular biology and genetics researchers Coleen T. Murphy, Steven A. McCarroll, Cornelia I. Bargmann, Andrew Fraser, Ravi S. Kamath, Julie Ahringer, Hao Li, and Cynthia Kenyon conducted an experiment that investigated the cellular aging in, Caenorhabditis elegans (C. elegans) nematodes. The researchers investigated the interactions between the transcription factor DAF-16 and the genes that regulate the production of an insulin-like growth factor 1 (IGF-1-like) protein related to the development, reproduction, and aging in C. elegans.